Developing AAV1-hOTOF Gene Therapy for Autosomal Recessive Deafness 9

AAV1-hOTOF gene therapy is an experimental molecular treatment developed for Autosomal Recessive Deafness 9 (DFNB9), a form of congenital, prelingual, severe-to-profound hearing loss caused by pathogenic variants in the OTOF gene. This condition provides a particularly compelling target for gene therapy because the disease mechanism is well defined, the affected cell population is relatively limited, and restoration of gene function has the potential to produce meaningful physiological recovery rather than merely slowing disease progression.

Autosomal Recessive Deafness 9 results from loss-of-function mutations in OTOF, which encodes otoferlin, a large multi-C2 domain protein that plays a critical role in synaptic vesicle exocytosis at the inner hair cell (IHC) ribbon synapse in the cochlea. Inner hair cells convert mechanical sound vibrations into electrical signals, but effective auditory signaling depends on precise and sustained neurotransmitter release from IHCs to spiral ganglion neurons. Otoferlin acts as a calcium sensor essential for this process. In individuals with DFNB9, IHCs are typically structurally intact and capable of mechanoelectrical transduction, but synaptic transmission is severely impaired or absent. As a result, auditory nerve activation fails, leading to profound hearing loss despite preserved hair cell survival, particularly early in life.

The preservation of inner hair cells distinguishes DFNB9 from many other genetic forms of deafness that involve progressive hair cell degeneration. This characteristic makes DFNB9 especially amenable to gene replacement therapy, because restoring otoferlin expression in existing IHCs has the potential to reestablish synaptic function and auditory signaling. In contrast to cochlear implants, which bypass the sensory epithelium by electrically stimulating the auditory nerve, gene therapy aims to repair the biological basis of hearing and preserve natural cochlear processing.

AAV1-hOTOF gene therapy employs adeno-associated virus serotype 1 (AAV1) as the delivery vector and a functional human OTOF transgene as the therapeutic payload. AAV vectors are widely used in inner ear gene therapy research due to their favorable safety profile, low immunogenicity, and ability to transduce post-mitotic cells such as inner hair cells. AAV1, in particular, has demonstrated efficient transduction of cochlear hair cells when delivered directly into the inner ear, making it a suitable candidate for DFNB9 applications.

One of the central technical challenges in OTOF gene therapy is the unusually large size of the OTOF coding sequence, which exceeds the approximately 4.7-kilobase packaging capacity of standard AAV vectors. To overcome this limitation, researchers have developed dual-AAV strategies, in which the OTOF gene is split into two separate vectors. Each vector carries a portion of the gene, and once inside the target cell, the two halves are reassembled through mechanisms such as homologous recombination, trans-splicing, or overlapping sequence recombination. The AAV1-hOTOF approach typically relies on such a dual-vector system to enable expression of full-length otoferlin in inner hair cells.

Preclinical studies in otoferlin-deficient mouse models have provided strong proof of concept for AAV-mediated OTOF gene replacement. In these models, cochlear delivery of dual-AAV constructs encoding Otof restored otoferlin expression in inner hair cells, reestablished synaptic vesicle release, and led to significant recovery of auditory brainstem responses. Treated animals demonstrated improved hearing thresholds and more normal synaptic morphology at IHC ribbon synapses. These results showed that even after congenital absence of otoferlin, the auditory system retains a degree of plasticity that allows functional recovery when synaptic transmission is restored.

Translation of AAV1-hOTOF gene therapy into human clinical trials has focused on early intervention, particularly in young children, based on the understanding that auditory pathways undergo critical periods of development. Providing functional auditory input during early life is crucial for normal speech and language acquisition. Consequently, clinical protocols emphasize treatment at a young age, ideally before extensive auditory deprivation leads to irreversible central auditory pathway deficits.

The therapeutic procedure typically involves local delivery of the AAV1-hOTOF vectors into the cochlea, most commonly via round window membrane injection or cochleostomy. This localized approach limits systemic exposure and concentrates vector delivery in the target tissue. Once administered, the vectors transduce inner hair cells, enabling expression of otoferlin and restoration of synaptic neurotransmission. Because inner hair cells are long-lived and largely non-dividing, a single administration may provide long-term benefit, assuming stable transgene expression.

Early clinical trial data, while still limited, have generated substantial interest due to reports of meaningful auditory improvements in treated children with DFNB9. Some participants have demonstrated gains in auditory brainstem response thresholds, sound detection, and speech perception, in some cases approaching levels that allow spoken language development without reliance on cochlear implants. These outcomes suggest that gene therapy may offer a biological alternative or complement to existing auditory prostheses for selected patients.

Safety considerations remain paramount. AAV1-hOTOF therapy is designed as a somatic, localized intervention, and no germline modification is involved. Potential risks include immune responses to the viral capsid, inflammation within the cochlea, unintended effects on non-target cells, and uncertainties regarding long-term transgene expression. Thus far, reported adverse events in early studies have been manageable, but long-term follow-up is essential to fully characterize safety and durability.

From a broader clinical perspective, AAV1-hOTOF gene therapy represents a landmark in the field of auditory medicine. It exemplifies a shift from assistive devices toward molecular repair of sensory function, leveraging detailed knowledge of disease mechanisms and advances in vector engineering. It also serves as a template for developing gene therapies for other forms of genetic deafness, many of which involve similarly well-defined molecular defects in cochlear hair cells or synaptic machinery.

In summary, AAV1-hOTOF gene therapy targets the root cause of Autosomal Recessive Deafness 9 by restoring otoferlin expression in inner hair cells using AAV1-based gene delivery. By repairing synaptic transmission rather than bypassing it, this approach holds the promise of physiologically normal hearing in affected individuals, particularly when administered early in life. While ongoing clinical trials are still establishing its long-term safety and efficacy, AAV1-hOTOF stands as one of the most advanced and scientifically grounded examples of gene therapy for inherited hearing loss and a significant step toward curative treatments for genetic deafness.

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